Difference between revisions of "Skmer"

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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|skmer}} |{{#vardefine:url|https://github.com/shahab-sarmashghi/Skmer}} <!--C...")
 
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[[Category:Software]][[Category:Phylogenomics‏‎]][[Category:Biology]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|skmer}}
 
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Revision as of 17:53, 6 June 2022

Description

skmer website  

Skmer is a fast tool for estimating distances between genomes from low-coverage sequencing reads (genome-skims), without needing any assembly or alignment step.

Environment Modules

Run module spider skmer to find out what environment modules are available for this application.

System Variables

  • HPC_SKMER_DIR - installation directory
  • HPC_SKMER_BIN - executable directory