Difference between revisions of "Seq crumbs"
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| − | [[Category:Software]][[Category:biology]][[Category: | + | [[Category:Software]][[Category:biology]][[Category:sequencing]][[Category:genomics]][[Category:utility]] |
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|{{#vardefine:app|seq_crumbs}} | |{{#vardefine:app|seq_crumbs}} | ||
Latest revision as of 15:12, 27 May 2022
Description
seq_crumbs aims to be a collection of small sequence processing utilities.
seq_crumbs is modeled after the Unix command line text processing utilities so every utility tries to perform a specific task and most of them take a sequence file as input and create a new processed sequence file as output. This design encourages the assembly of the seq_crumbs utilities with Unix pipes to create complex pipelines. There are already other similar software that uses this approach like fastx and biopieces.
Environment Modules
Run module spider seq_crumbs to find out what environment modules are available for this application.
System Variables
- HPC_SEQ_CRUMBS_DIR - installation directory
- HPC_SEQ_CRUMBS_BIN - executable directory