Difference between revisions of "Seq crumbs"

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(Created page with "Category:SoftwareCategory:biologyCategory:sequenceCategory:genomicsCategory:utilities {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|seq_crumbs}} |{{#v...")
 
 
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[[Category:Software]][[Category:biology]][[Category:sequence]][[Category:genomics]][[Category:utilities]]
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[[Category:Software]][[Category:biology]][[Category:sequencing]][[Category:genomics]][[Category:utility]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|seq_crumbs}}
 
|{{#vardefine:app|seq_crumbs}}
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
  
 
<!--Configuration-->
 
<!--Configuration-->

Latest revision as of 15:12, 27 May 2022

Description

seq_crumbs website  

seq_crumbs aims to be a collection of small sequence processing utilities.

seq_crumbs is modeled after the Unix command line text processing utilities so every utility tries to perform a specific task and most of them take a sequence file as input and create a new processed sequence file as output. This design encourages the assembly of the seq_crumbs utilities with Unix pipes to create complex pipelines. There are already other similar software that uses this approach like fastx and biopieces.

Environment Modules

Run module spider seq_crumbs to find out what environment modules are available for this application.

System Variables

  • HPC_SEQ_CRUMBS_DIR - installation directory
  • HPC_SEQ_CRUMBS_BIN - executable directory