Difference between revisions of "Seq crumbs"
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Revision as of 15:31, 7 February 2018
Description
seq_crumbs aims to be a collection of small sequence processing utilities.
seq_crumbs is modeled after the Unix command line text processing utilities so every utility tries to perform a specific task and most of them take a sequence file as input and create a new processed sequence file as output. This design encourages the assembly of the seq_crumbs utilities with Unix pipes to create complex pipelines. There are already other similar software that uses this approach like fastx and biopieces.
Environment Modules
Run module spider seq_crumbs to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:seq_crumbs}}_DIR - installation directory
- HPC_{{#uppercase:seq_crumbs}}_BIN - executable directory