Seekdeep
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Description
The SeekDeep pipeline is intended for use on targeted amplicon sequencing data for haplotype frequency estimation for multiple samples from a population.
Environment Modules
Run module spider seekdeep to find out what environment modules are available for this application.
System Variables
- HPC_SEEKDEEP_DIR - installation directory
Citation
If you publish research that uses seekdeep you have to cite it as follows:
Hathaway, Nicholas J., Christian M. Parobek, Jonathan J. Juliano, and Jeffrey A. Bailey. 2017. “SeekDeep: Single-Base Resolution de Novo Clustering for Amplicon Deep Sequencing.” Nucleic Acids Research, November. https://doi.org/10.1093/nar/gkx1201.