Samtools

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Description

samtools website  

SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Note: The Samtools 0.1.18 install includes the tabix and bgzip binaries from the Tabix-0.2.6 software.

Required Modules

modules documentation

Serial

  • samtools
  • HPC_SAMTOOLS_BIN - executable directory