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saige website  

SAIGE is an R package developed with Rcpp for genome-wide association tests in large-scale data sets and biobanks.

Environment Modules

Run module spider saige to find out what environment modules are available for this application.

System Variables

  • HPC_SAIGE_DIR - installation directory
  • HPC_SAIGE_BIN - executable directory


If you publish research that uses saige you have to cite it as follows:

The SAIGE manuscript: Wei Zhou, Jonas B. Nielsen, Lars G. Fritsche, Maiken B. Elvestad, Brooke Wolford, Maoxuan Lin, Kristian Hveem, Hyun Min Kang, Goncalo R. Abecasis, Cristen J. Willer*, Seunggeun Lee* “Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.” Nature Genetics 50, 1335–1341 (2018)