STAR-Fusion
Revision as of 16:50, 16 October 2017 by Moskalenko (talk | contribs)
Description
STAR-Fusion is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner to map junction reads and spanning reads to a reference annotation set.
Required Modules
Serial
- gcc/5.2.0
- star-fusion
System Variables
- HPC_{{#uppercase:star-fusion}}_DIR - installation directory
Citation
If you publish research that uses star-fusion you have to cite it as follows:
A STAR-Fusion manuscript preprint is now available on bioRxiv