Difference between revisions of "STAR"
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Revision as of 13:30, 29 July 2016
Description
STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.
For details, please see the paper:
A. Dobin et al, Bioinformatics 2012; doi: 10.1093/bioinformatics/bts635 "STAR: ultrafast universal RNA-seq aligner"
Required Modules
Serial
- star
System Variables
- HPC_{{#uppercase:star}}_DIR
Additional Information
Make sure to set a directory for temporary files within your /ufrc working directory with the '--outTempDir argument to avoid job crashes and filling up diskless compute nodes. See Temporary Directories for more information.