Difference between revisions of "SOAPsplice"

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==System Variables==
 
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* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
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=Validation=
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* Validated 4/5/2018

Latest revision as of 21:24, 6 December 2019

Description

soapsplice website  

SOAPsplice is a tool for genome-wide ab initio detection of splice junction sites from RNA-Seq. The tool performs better than the previous tools by detecting similar numbers of true junctions with lower false positives as the best performing tools in all different situations with different read lengths and coverage. In particular, SOAPsplice performs better by predicting more true junctions with low false positive rate when the coverage is low, which is useful for detecting the junctions for those mRNAs with relatively lower expression level.

Required Modules

Serial

  • soapsplice

System Variables

  • HPC_SOAPSPLICE_DIR - installation directory





Validation

  • Validated 4/5/2018