Difference between revisions of "Rnaseqlib"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:PhylogeneticsCategory:RNA-Seq {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|rnaseqlib}} |{{#vardefine:url|https:...")
 
 
(One intermediate revision by one other user not shown)
Line 23: Line 23:
  
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* gcc/5.2.0
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 15:15, 10 June 2022

Description

rnaseqlib website  

rnaseqlib is a simple, lightweight pipeline for RNA-Seq analysis.

Supports mRNA-Seq, Ribo-Seq, and CLIP-Seq analyses.

Environment Modules

Run module spider rnaseqlib to find out what environment modules are available for this application.

System Variables

  • HPC_RNASEQLIB_DIR - installation directory