Difference between revisions of "RiboPicker"

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==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_RIBOPICKER_BIN - executable directory
* HPC_RIBOPICKER_BIN - executable directory

Revision as of 21:24, 6 December 2019


ribopicker website  

The riboPicker tool can be used to automatically identify and efficiently remove rRNA-like sequences from metatranscriptomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface.

Required Modules

modules documentation


  • ribopicker

System Variables

  • HPC_RIBOPICKER_DIR - installation directory
  • HPC_RIBOPICKER_BIN - executable directory

Additional Information


The following Ribosomal RNA databases are available for use with RiboPicker at HPC:

A ribopicker alias was created for the main ribopicker.pl Perl script. To run RiboPicker use

ribopicker [options] -f <file> -dbs <list> ...

For more information on the options run

ribopicker -h


  • Validated 4/5/2018