Difference between revisions of "Recycler"
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(Created page with "Category:Software Category:Sequencing Category:Biology Category:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|recycler}} |{{#vardefine:url|https:...") |
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[[Category:Sequencing]] | [[Category:Sequencing]] | ||
[[Category:Biology]] | [[Category:Biology]] | ||
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{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|recycler}} | |{{#vardefine:app|recycler}} | ||
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|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
| − | |{{#vardefine:citation|}} <!--CITATION--> | + | |{{#vardefine:citation|1}} <!--CITATION--> |
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | @article{rozov2017recycler, | |
| + | title={Recycler: an algorithm for detecting plasmids from de novo assembly graphs}, | ||
| + | author={Rozov, Roye and Brown Kav, Aya and Bogumil, David and Shterzer, Naama and Halperin, Eran and Mizrahi, Itzhak and Shamir, Ron}, | ||
| + | journal={Bioinformatics}, | ||
| + | volume={33}, | ||
| + | number={4}, | ||
| + | pages={475--482}, | ||
| + | year={2017}, | ||
| + | publisher={Oxford University Press} | ||
|}} | |}} | ||
Latest revision as of 14:21, 11 October 2022
Description
Recycler is a tool that can extract complete circular contigs from sequence data of isolate microbial genomes, plasmidome and metagenome sequence data.
Environment Modules
Run module spider recycler to find out what environment modules are available for this application.
System Variables
- HPC_RECYCLER_DIR - installation directory
Citation
If you publish research that uses recycler you have to cite it as follows:
@article{rozov2017recycler,
title={Recycler: an algorithm for detecting plasmids from de novo assembly graphs},
author={Rozov, Roye and Brown Kav, Aya and Bogumil, David and Shterzer, Naama and Halperin, Eran and Mizrahi, Itzhak and Shamir, Ron},
journal={Bioinformatics},
volume={33},
number={4},
pages={475--482},
year={2017},
publisher={Oxford University Press}