Difference between revisions of "Recon"

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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|recon}} |{{#vardefine:url|http://eddylab.org/software/recon/}} <!--CONFIGURATION: OPTIONAL (|1}} means...")
 
 
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[[Category:Software]]
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[[Category:Software]][[Category:Biology]][[Category:Sequencing]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|recon}}
 
|{{#vardefine:app|recon}}
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
* HPC_{{#uppercase:{{#var:app}}}}_SCRIPTS - scripts directory
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* HPC_{{uc:{{#var:app}}}}_SCRIPTS - scripts directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:38, 21 August 2022

Description

recon website  

RECON: a package for automated de novo identification of repeat families from genomic sequences

Environment Modules

Run module spider recon to find out what environment modules are available for this application.

System Variables

  • HPC_RECON_DIR - installation directory
  • HPC_RECON_BIN - executable directory
  • HPC_RECON_SCRIPTS - scripts directory