Raven

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Description

raven website  

Raven is a de novo genome assembler for long uncorrected reads.

Environment Modules

Users should create their own environments for this application. See below for additional information.




Installation

Building the application (with CUDA support):

module load conda

mamba create -yp /blue/your/install/path/raven/1.8.3 python zlib gcc cmake doxygen boost thrust=1.9.8

mamba activate /blue/your/install/path/raven/1.8.3

module load cuda

git clone https://github.com/lbcb-sci/raven && cd raven

cmake -S ./ -B./build -DRAVEN_BUILD_EXE=1 -DCMAKE_BUILD_TYPE=Release -Dracon_enable_cuda=Yes --install-prefix=/blue/your/install/path/raven/1.8.3

cmake --build build

cmake --install ./build

Add the installation path to your $PATH for runtime.