RaGOO

Description

ragoo website  

A tool to order and orient genome assembly contigs via Minimap2 alignments to a reference genome.

Environment Modules

Run module spider ragoo to find out what environment modules are available for this application.

System Variables

• HPC_RAGOO_DIR - installation directory
• HPC_RAGOO_BIN - executable directory

Citation

If you publish research that uses ragoo you have to cite it as follows:

Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and accurate reference-guided scaffolding of draft genomes. bioRxiv 2019.