Difference between revisions of "QualiMap"
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Revision as of 21:24, 6 December 2019
Description
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.
Required Modules
Serial
- qualimap
System Variables
- HPC_QUALIMAP_DIR - installation directory
Additional Information
Available tools:
- bamqc - Evaluate NGS mapping to a reference genome
- rnaseq - Evaluate RNA-seq alignment data
- counts - Counts data analysis (further RNA-seq data evaluation)
- multi-bamqc - Compare QC reports from multiple NGS mappings
- clustering - Cluster epigenomic signals
- comp-counts - Compute feature counts
Citation
If you publish research that uses qualimap you have to cite it as follows: