Difference between revisions of "PurgeDups"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|purge_dups}} |{{#vardefine:url|https://github.com/dfguan/purge_dups}} <!--CO...") |
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[[Category:Software]][[Category:Phylogenetics]] | [[Category:Software]][[Category:Phylogenetics]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
| − | |{{#vardefine:app| | + | |{{#vardefine:app|Purge_Dups}} |
|{{#vardefine:url|https://github.com/dfguan/purge_dups}} | |{{#vardefine:url|https://github.com/dfguan/purge_dups}} | ||
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
Latest revision as of 18:50, 27 May 2022
Description
Purge haplotigs and overlaps in an assembly based on read depth
Environment Modules
Run module spider Purge_Dups to find out what environment modules are available for this application.
System Variables
- HPC_PURGE_DUPS_DIR - installation directory
- HPC_PURGE_DUPS_BIN - executable directory
- HPC_PURGE_DUPS_SCP - scripts directory