Difference between revisions of "Pseudofinder"
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Revision as of 13:41, 11 October 2021
Description
Pseudofinder is a bioinformatics tool that detects pseudogene candidates from annotated genbank files of bacterial and archaeal genomes.
It has been tested mostly on genbank (.gbf/.gbk) files annotated by Prokka with the --compliant flag (i.e. including both /gene and /CDS annotations).
Environment Modules
Run module spider pseudofinder
to find out what environment modules are available for this application.
System Variables
- HPC_PSEUDOFINDER_DIR - installation directory
Citation
If you publish research that uses pseudofinder you have to cite it as follows: