Difference between revisions of "Proteinortho"

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[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
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{{#if: {{#var: mod}}|==Execution Environment and Modules==
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==Environment Modules==
{{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
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==System Variables==
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
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{{#if: {{#var: exe}}|==How To Run==
 
{{#if: {{#var: exe}}|==How To Run==
 
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DOUBLE_CLICK_TO_WRITE_INSTRUCTIONS_ON_RUNNING_THE_ACTUAL_BINARY

Latest revision as of 20:27, 12 August 2022

Description

proteinortho website  

Computation of genome-wide orthology data.

The program Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic.

Environment Modules

Run module spider proteinortho to find out what environment modules are available for this application.

System Variables

  • HPC_PROTEINORTHO_DIR - installation directory