Difference between revisions of "Proovread"
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==System Variables== | ==System Variables== | ||
− | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR |
− | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN |
− | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_CONF |
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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__NOTOC____NOEDITSECTION__ | __NOTOC____NOEDITSECTION__ | ||
+ | =Validation= | ||
+ | * Validated 4/5/2018 |
Revision as of 21:22, 6 December 2019
Description
Large scale high-accuracy BioPac correction through iterative short read consensus.
Required Modules
Serial
- Proovread
System Variables
- HPC_PROOVREAD_DIR
- HPC_PROOVREAD_BIN
- HPC_PROOVREAD_CONF
Additional Information
For advanced usage copy the configuration file from $HPC_PROOVREAD_CONF to your working directory and adjust as needed for the analysis at hand.
Citation
proovread: large-scale high accuracy PacBio correction through iterative short read consensus. Hackl, T.; Hedrich, R.; Schultz, J.; Förster, F. (2014).
Validation
- Validated 4/5/2018