Porechop
Revision as of 21:23, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity.
Environment Modules
Run module spider porechop to find out what environment modules are available for this application.
System Variables
- HPC_PORECHOP_DIR - installation directory
- HPC_PORECHOP_BIN - executable directory