Difference between revisions of "Popcorn"
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Revision as of 22:17, 8 March 2022
Description
Popcorn is a program for estimaing the correlation of causal variant effect sizes across populations in GWAS.
Environment Modules
Run module spider popcorn to find out what environment modules are available for this application.
System Variables
- HPC_POPCORN_DIR - installation directory
- HPC_POPCORN_BIN - executable directory
Usage Examples
$ python popcorn compute --bfile /apps/popcorn/20211104/test/EAS_ref EAS.cscore
$ python /apps/popcorn/20211104/lib/popcorn/__main__.py compute --bfile /apps/popcorn/20211104/test/EAS_ref EAS.cscore