Plasflow
Revision as of 20:16, 31 May 2022 by Israel.herrera (talk | contribs) (Created page with "Category:Software[[Category::Biology]]Category:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|plasfow}} |{{#vardefine:url|https://github.com/smaegol/...")
[[Category::Biology]]
Description
PlasFlow is a set of scripts used for prediction of plasmid sequences in metagenomic contigs. It relies on the neural network models trained on full genome and plasmid sequences and is able to differentiate between plasmids and chromosomes with accuracy reaching 96%. It outperforms other available solutions for plasmids recovery from metagenomes and incorporates the thresholding which allows for exclusion of incertain predictions.
Environment Modules
Run module spider plasfow to find out what environment modules are available for this application.
System Variables
- HPC_PLASFOW_DIR - installation directory