Difference between revisions of "PhyloBayes"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replace - "Usage policy" to "Usage Policy") |
Moskalenko (talk | contribs) m (Text replace - "{{#if: {{#var: mod}}|==Execution Environment and Modules== {{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}" to "==Required Modules== modules documentation ===Serial=== *{{#var:app}}") |
||
| Line 36: | Line 36: | ||
<!--Modules--> | <!--Modules--> | ||
| − | + | ==Required Modules== | |
| − | + | [[Modules|modules documentation]] | |
| + | ===Serial=== | ||
| + | *{{#var:app}} | ||
* HPC_PHYLOBAYES_BIN - executable directory | * HPC_PHYLOBAYES_BIN - executable directory | ||
* HPC_PHYLOBAYES_DOC - documentation directory | * HPC_PHYLOBAYES_DOC - documentation directory | ||
Revision as of 16:55, 10 August 2012
Description
PhyloBayes is a Bayesian Monte Carlo Markov Chain (MCMC) sampler for phylogenetic reconstruction using protein alignments. Compared to other phylogenetic MCMC samplers, the main distinguishing feature of PhyloBayes is the underlying probabilistic model, CAT (Lartillot and Philippe, 2004). CAT is a mixture model especially devised to account for site-specific features of protein evolution. It is particularly well suited for large multigene alignments, such as those used in phylogenomics.
Required Modules
Serial
- phylobayes
- HPC_PHYLOBAYES_BIN - executable directory
- HPC_PHYLOBAYES_DOC - documentation directory