Difference between revisions of "Phenix"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:Crystallography {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|phenix}} |{{#vardefine:url|http://www.phenix-online.org/}} <!--CONFIGURATI...")
 
 
(5 intermediate revisions by 2 users not shown)
Line 1: Line 1:
[[Category:Software]][[Category:Crystallography]]
+
[[Category:Software]][[Category:Material Science]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|phenix}}
 
|{{#vardefine:app|phenix}}
Line 20: Line 20:
 
PHENIX is a software suite for the automated determination of macromolecular structures using X-ray crystallography and other methods.
 
PHENIX is a software suite for the automated determination of macromolecular structures using X-ray crystallography and other methods.
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
===Serial===
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 18:12, 21 August 2022

Description

phenix website  

PHENIX is a software suite for the automated determination of macromolecular structures using X-ray crystallography and other methods.

Environment Modules

Run module spider phenix to find out what environment modules are available for this application.

System Variables

  • HPC_PHENIX_DIR - installation directory

Additional Information

The Graphical User Interface to Phenix can be used to visualize the results of the analyses. It can be run on a gui node.



Citation

If you publish research that uses phenix you have to cite it as follows:

PHENIX: a comprehensive Python-based system for macromolecular structure solution. P. D. Adams, P. V. Afonine, G. Bunkóczi, V. B. Chen, I. W. Davis, N. Echols, J. J. Headd, L.-W. Hung, G. J. Kapral, R. W. Grosse-Kunstleve, A. J. McCoy, N. W. Moriarty, R. Oeffner, R. J. Read, D. C. Richardson, J. S. Richardson, T. C. Terwilliger and P. H. Zwart. Acta Cryst. D66, 213-221 (2010).