Difference between revisions of "PfamScan"
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Revision as of 18:09, 13 February 2015
Description
Search a FASTA file against a library of Pfam HMMs
Note that on our system the pfamscan module is an alias for the hmmer module as we installed pfamscan within hmmer.
Required Modules
Serial
- pfamscan
System Variables
- HPC_{{#uppercase:pfamscan}}_DIR - installation directory
Citation
If you publish research that uses pfamscan you have to cite it as follows:
The Pfam protein families database: R.D. Finn, A. Bateman, J. Clements, P. Coggill, R.Y. Eberhardt, S.R. Eddy, A. Heger, K. Hetherington, L. Holm, J. Mistry, E.L.L. Sonnhammer, J. Tate, M. Punta Nucleic Acids Research (2014) Database Issue 42:D222-D230