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pbtranscript-tofu website  

The scripts in this repository are now compatible with SMRTAnalysis 2.3. It is a "beta" version of the RS_IsoSeq protocol that is supported in 2.3, meaning that it extends the existing RS_IsoSeq code base, and is an unofficial, developemental version of RS_IsoSeq. This beta version is only accessible via command line. The command line name of the official RS_IsoSeq is pbtranscript, to differentiate from the official version, in the tutorials we will refer to the beta version provided on this site as pbtranscript-tofu.

Environment Modules

Run module spider pbtranscript-tofu to find out what environment modules are available for this application.

System Variables

  • HPC_PBTRANSCRIPT-TOFU_DIR - installation directory
  • HPC_PBTRANSCRIPT-TOFU_BIN - executable directory