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panaroo website  

panaroo is a pipeline for pangenome investigation.

Environment Modules

Run module spider panaroo to find out what environment modules are available for this application.

System Variables

  • HPC_PANAROO_BIN - executable directory
  • HPC_PANAROO_DIR - installation directory


If you publish research that uses panaroo you have to cite it as follows:

Tonkin-Hill G, MacAlasdair N, Ruis C, Weimann A, Horesh G, Lees JA, Gladstone RA, Lo S, Beaudoin C, Floto RA, Frost SDW, Corander J, Bentley SD, Parkhill J. 2020. Producing polished prokaryotic pangenomes with the Panaroo pipeline. Genome Biol 21:180.