Difference between revisions of "Novoalign"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replace - "<!--Compiler and MPI settings - OPTIONAL --> |{" to "|{") |
Moskalenko (talk | contribs) |
||
| Line 28: | Line 28: | ||
and the results of the analyses must published in peer-reviewed journals as | and the results of the analyses must published in peer-reviewed journals as | ||
requested by the software manufacturer [http://www.novocraft.com/wiki/tiki-view_faq.php?faqId=1#q23 in Novoalign FAQ]. | requested by the software manufacturer [http://www.novocraft.com/wiki/tiki-view_faq.php?faqId=1#q23 in Novoalign FAQ]. | ||
| − | |||
<!--Modules--> | <!--Modules--> | ||
==Required Modules== | ==Required Modules== | ||
| Line 34: | Line 33: | ||
===Serial=== | ===Serial=== | ||
*{{#var:app}} | *{{#var:app}} | ||
| + | ==System Variables== | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
* HPC_NOVOALIGN_BIN - executable directory | * HPC_NOVOALIGN_BIN - executable directory | ||
* HPC_NOVOALIGN_DOC - documentation directory | * HPC_NOVOALIGN_DOC - documentation directory | ||
Revision as of 19:22, 10 August 2012
Description
Novoalign is a highly accurate program for mapping next-generation sequencing reads to a reference database. It is an aligner for single-ended and paired-end reads from the Illumina Genome Analyser. Novoalign finds global optimum alignments using full Needleman-Wunsch algorithm with affine gap penalties.
Limited functionality and single-threaded performance are available without a paid license. Novoalign must only be used for academic/non-profit research and the results of the analyses must published in peer-reviewed journals as requested by the software manufacturer in Novoalign FAQ.
Required Modules
Serial
- novoalign
System Variables
- HPC_{{#uppercase:novoalign}}_DIR - installation directory
- HPC_NOVOALIGN_BIN - executable directory
- HPC_NOVOALIGN_DOC - documentation directory