Difference between revisions of "Novoalign"
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and the results of the analyses must published in peer-reviewed journals as | and the results of the analyses must published in peer-reviewed journals as | ||
requested by the software manufacturer [http://www.novocraft.com/wiki/tiki-view_faq.php?faqId=1#q23 in Novoalign FAQ]. | requested by the software manufacturer [http://www.novocraft.com/wiki/tiki-view_faq.php?faqId=1#q23 in Novoalign FAQ]. | ||
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==Available versions== | ==Available versions== | ||
* 2.07.15 - free version (academic, non-profit use; limited functionality and performance) | * 2.07.15 - free version (academic, non-profit use; limited functionality and performance) | ||
Revision as of 02:00, 10 August 2012
Description
Novoalign is a highly accurate program for mapping next-generation sequencing reads to a reference database. It is an aligner for single-ended and paired-end reads from the Illumina Genome Analyser. Novoalign finds global optimum alignments using full Needleman-Wunsch algorithm with affine gap penalties.
Limited functionality and single-threaded performance are available without a paid license. Novoalign must only be used for academic/non-profit research and the results of the analyses must published in peer-reviewed journals as requested by the software manufacturer in Novoalign FAQ.
Available versions
- 2.07.15 - free version (academic, non-profit use; limited functionality and performance)
Running the application using modules
To use novoalign with the environment modules system at HPC the following commands are available:
Get module information for novoalign:
$module spider novoalign
Load the default application module:
$module load novoalign
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_NOVOALIGN_DIR - directory where novoalign is located.
- HPC_NOVOALIGN_BIN - executable directory
- HPC_NOVOALIGN_DOC - documentation directory