Difference between revisions of "NextGenMap"
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 13:58, 21 March 2017
Description
NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analyzing large-scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids bias…
Required Modules
Serial
- gcc/5.2.0
- nextgenmap
System Variables
- HPC_{{#uppercase:nextgenmap}}_DIR - installation directory
- HPC_{{#uppercase:nextgenmap}}_BIN - executable directory
Citation
If you publish research that uses nextgenmap you have to cite it as follows: