Newbler

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Revision as of 16:32, 10 August 2012 by Moskalenko (talk | contribs) (Text replace - "Usage policy" to "Usage Policy")
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Description

newbler website  

Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life Sciences, a Roche Diagnostics company.

Execution Environment and Modules

To use newbler with the environment modules system at HPC the following commands are available:

Get module information for newbler:

$module spider newbler

Load the default application module:

$module load newbler

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_NEWBLER_DIR - directory where newbler is located.
  • HPC_NEWBLER_BIN - executable directory