Difference between revisions of "NanoCount"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|nanocount}} |{{#vardefine:url|/apps/nanocount/0.2.1/bin}} <!--CONFIGURATION:...") |
(No difference)
|
Revision as of 20:28, 14 May 2020
Description
[/apps/nanocount/0.2.1/bin nanocount website]
NanoCount estimates transcripts abundance from Oxford Nanopore direct-RNA sequencing datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
Environment Modules
Run module spider nanocount
to find out what environment modules are available for this application.
System Variables
- HPC_NANOCOUNT_DIR - installation directory
- HPC_NANOCOUNT_BIN - executable directory