Difference between revisions of "NGSUtils"

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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
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{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:22, 6 December 2019

Description

ngsutils website  

NGSUtils is a suite of software tools for working with next-generation
sequencing datasets. They are useful for processing Illumia, SOLiD, 454, Ion
Torrent, and PacBio sequencing data. They can be used for DNA and RNA
resequencing, ChIP-Seq, CLIP-Seq, and targeted resequencing (Agilent exome
capture and PCR targeting).

Required Modules

Serial

  • ngsutils

System Variables

  • HPC_NGSUTILS_DIR - installation directory




Citation

If you publish research that uses ngsutils you have to cite it as follows:

Marcus R. Breese and Yunlong Liu NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets Bioinformatics (2013) 29(4): 494-496


Validation

  • Validated 4/5/2018