Difference between revisions of "Misa"

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(Created page with "Category:SoftwareCategory:GenomicsCategory:Bioinformatics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|misa}} |{{#vardefine:url|http://pgrc.ipk-gatersleben.d...")
 
 
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[[Category:Software]][[Category:Genomics]][[Category:Bioinformatics]]
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[[Category:Software]][[Category:Genomics]][[Category:Biology]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|misa}}
 
|{{#vardefine:app|misa}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
===Serial===
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 19:52, 12 August 2022

Description

misa website  

This tool allows the identification and localization of perfect microsatellites as well as compound microsatellites which are interrupted by a certain number of bases.

Environment Modules

Run module spider misa to find out what environment modules are available for this application.

System Variables

  • HPC_MISA_DIR - installation directory