Difference between revisions of "MicrobeAnnotator"

From UFRC
Jump to navigation Jump to search
m (Israel.herrera moved page Microbeannotator to MicrobeAnnotator without leaving a redirect)
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
[[Category:Software]][[Category:Microbial Annotation]][[Category:Biology]]
+
[[Category:Software]][[Category:Annotation]][[Category:Biology]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|microbeannotator}}
 
|{{#vardefine:app|microbeannotator}}
Line 26: Line 26:
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 +
* HPC_{{uc:{{#var:app}}}}_REF - reference database
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 19:02, 10 October 2022

Description

microbeannotator website  

Easy-to-use pipeline for the comprehensive metabolic annotation of microbial genomes.

Environment Modules

Run module spider microbeannotator to find out what environment modules are available for this application.

System Variables

  • HPC_MICROBEANNOTATOR_DIR - installation directory
  • HPC_MICROBEANNOTATOR_BIN - executable directory
  • HPC_MICROBEANNOTATOR_REF - reference database




Citation

If you publish research that uses microbeannotator you have to cite it as follows:

MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes