Difference between revisions of "Mfold"

From UFRC
Jump to navigation Jump to search
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
[[Category:Software]][[Category:Bioinformatics]][[Category:Structure]]
+
[[Category:Software]][[Category:Biology]][[Category:Structure]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|mfold}}
 
|{{#vardefine:app|mfold}}
Line 20: Line 20:
 
Mfold is an integrated collection of programs that simulate nucleic acid folding and hybridization and its melting pathways for one or two single-stranded sequences. The package predicts folding for single-stranded RNA or DNA through combination of free energy minimization, partition function calculations and stochastic sampling.
 
Mfold is an integrated collection of programs that simulate nucleic acid folding and hybridization and its melting pathways for one or two single-stranded sequences. The package predicts folding for single-stranded RNA or DNA through combination of free energy minimization, partition function calculations and stochastic sampling.
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
===Serial===
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{uc:{{#var:app}}}}_DIR
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
Line 67: Line 57:
 
<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
__NOTOC____NOEDITSECTION__
 
__NOTOC____NOEDITSECTION__
=Validation=
 
* Validated 4/5/2018
 

Latest revision as of 19:51, 12 August 2022

Description

mfold website  

Mfold is an integrated collection of programs that simulate nucleic acid folding and hybridization and its melting pathways for one or two single-stranded sequences. The package predicts folding for single-stranded RNA or DNA through combination of free energy minimization, partition function calculations and stochastic sampling.

Environment Modules

Run module spider mfold to find out what environment modules are available for this application.

System Variables

  • HPC_MFOLD_DIR - installation directory