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methylpy website  

Methylpy, a pyhton-based analysis pipeline for

(single-cell) (whole-genome) bisulfite sequencing data (single-cell) NOMe-seq data differential methylation analysis

Environment Modules

Run module spider methylpy to find out what environment modules are available for this application.

System Variables

  • HPC_METHYLPY_DIR - installation directory
  • HPC_METHYLPY_BIN - executable directory


If you publish research that uses methylpy you have to cite it as follows:

Matthew D. Schultz, Yupeng He, John W.Whitaker, Manoj Hariharan, Eran A. Mukamel, Danny Leung, Nisha Rajagopal, Joseph R. Nery, Mark A. Urich, Huaming Chen, Shin Lin, Yiing Lin, Bing Ren, Terrence J. Sejnowski, Wei Wang, Joseph R. Ecker. Human Body Epigenome Maps Reveal Noncanonical DNA Methylation Variation. Nature. 523(7559):212-216, 2015 Jul.