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metacompare website  

MetaCompare is a computational pipeline for prioritizing resistome risk by estimating the potential for ARGs to be disseminated into human pathogens from a given environmental sample based on metagenomic sequencing data.

Environment Modules

Run module spider metacompare to find out what environment modules are available for this application.

System Variables

  • HPC_METACOMPARE_DIR - installation directory
  • HPC_METACOMPARE_BIN - executable directory
  • HPC_METACOMPARE_DB - database directory


If you publish research that uses metacompare you have to cite it as follows:

Oh, M., Pruden, A., Chen, C., Heath, L. S., Xia, K., & Zhang, L. (2018). MetaCompare: A computational pipeline for prioritizing environmental resistome risk. FEMS microbiology ecology.