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Latest revision as of 13:30, 15 August 2022


mashtree website  

Create a tree using Mash distances

Environment Modules

Run module spider mashtree to find out what environment modules are available for this application.

System Variables

  • HPC_MASHTREE_DIR - installation directory
  • HPC_MASHTREE_BIN - executable directory


If you publish research that uses mashtree you have to cite it as follows:

Katz, L. S., Griswold, T., Morrison, S., Caravas, J., Zhang, S., den Bakker, H.C., Deng, X., and Carleton, H. A., (2019). Mashtree: a rapid comparison of whole genome sequence files. Journal of Open Source Software, 4(44), 1762