Magicblast

Description

magicblast website  

Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of RNA-seq, locating the candidate introns and adding up the score of all exons. This is very different from other versions of BLAST, where each exon is scored as a separate hit and read-pairing is ignored.

Environment Modules

Run module spider magicblast to find out what environment modules are available for this application.

System Variables

• HPC_MAGICBLAST_DIR - installation directory