Difference between revisions of "MRIcron"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:Imaging {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|mricron}} |{{#vardefine:url|http://www.mccauslandcenter...") |
Moskalenko (talk | contribs) m (Text replace - "hpc.ufl.edu" to "rc.ufl.edu") |
||
| Line 18: | Line 18: | ||
{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | Chris Rorden's MRIcron. This modules provides the full MRIcron package although it was primarily installed to provide dcm2nii for the nipype, which attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. NIfTI is a modern incarnation of the Analyze format, but includes important information like the orientation of the image. DCM2NII is a stand-alone program that is distributed with MRIcron. GUI tools from this package can only be run on the gui. | + | Chris Rorden's MRIcron. This modules provides the full MRIcron package although it was primarily installed to provide dcm2nii for the nipype, which attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. NIfTI is a modern incarnation of the Analyze format, but includes important information like the orientation of the image. DCM2NII is a stand-alone program that is distributed with MRIcron. GUI tools from this package can only be run on the gui.rc.ufl.edu machine as described in [[GUI_Programs]]. |
<!--Modules--> | <!--Modules--> | ||
==Required Modules== | ==Required Modules== | ||
Revision as of 18:15, 21 June 2017
Description
Chris Rorden's MRIcron. This modules provides the full MRIcron package although it was primarily installed to provide dcm2nii for the nipype, which attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. NIfTI is a modern incarnation of the Analyze format, but includes important information like the orientation of the image. DCM2NII is a stand-alone program that is distributed with MRIcron. GUI tools from this package can only be run on the gui.rc.ufl.edu machine as described in GUI_Programs.
Required Modules
Serial
- mricron
System Variables
- HPC_{{#uppercase:mricron}}_DIR