Difference between revisions of "MRIcron"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
|||
| Line 20: | Line 20: | ||
Chris Rorden's MRIcron. This modules provides the full MRIcron package although it was primarily installed to provide dcm2nii for the nipype, which attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. NIfTI is a modern incarnation of the Analyze format, but includes important information like the orientation of the image. DCM2NII is a stand-alone program that is distributed with MRIcron. GUI tools from this package can only be run on the gui.rc.ufl.edu machine as described in [[GUI_Programs]]. | Chris Rorden's MRIcron. This modules provides the full MRIcron package although it was primarily installed to provide dcm2nii for the nipype, which attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. NIfTI is a modern incarnation of the Analyze format, but includes important information like the orientation of the image. DCM2NII is a stand-alone program that is distributed with MRIcron. GUI tools from this package can only be run on the gui.rc.ufl.edu machine as described in [[GUI_Programs]]. | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | |||
| − | < | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{uc:{{#var:app}}}}_DIR | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 20:37, 10 June 2022
Description
Chris Rorden's MRIcron. This modules provides the full MRIcron package although it was primarily installed to provide dcm2nii for the nipype, which attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. NIfTI is a modern incarnation of the Analyze format, but includes important information like the orientation of the image. DCM2NII is a stand-alone program that is distributed with MRIcron. GUI tools from this package can only be run on the gui.rc.ufl.edu machine as described in GUI_Programs.
Environment Modules
Run module spider mricron to find out what environment modules are available for this application.
System Variables
- HPC_MRICRON_DIR - installation directory