Difference between revisions of "MONAI label"

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USAGE:
 
USAGE:
 
       1) Server:
 
       1) Server:
      To start the server as a slurm job:
+
        To start the server as a slurm job:
      sbatch start_monai_server_readonly.sh
+
        -sbatch start_monai_server_readonly.sh
      Note server address from job output: used in next step
+
        -Note server address from job output: used in next step
  
 
       2) 3DSlicer client
 
       2) 3DSlicer client
      - Start Open On Demand (OOD) session
+
        - Start Open On Demand (OOD) session
      - Start Console in hwgui with 1 GPU: gpu:geforce:1
+
        - Start Console in hwgui with 1 GPU: gpu:geforce:1
      - In console: load & start Slicer
+
        - In console: load & start Slicer
          ml slicer/4.13.0
+
            ml slicer/4.13.0
          Slicer
+
            Slicer
      - In Slicer GUI:
+
        - In Slicer GUI:
          Select module: Active Learning -> MONAILabel
+
            Select module: Active Learning -> MONAILabel
          Fill in server address, e.g.: http://c1007a-s17:8000/
+
            Fill in server address, e.g.: http://c1007a-s17:8000/
          Click on refresh button next to server address
+
            Click on refresh button next to server address
          Load Next Sample
+
            Load Next Sample
 
            
 
            
 
You are good to go! Enjoy!
 
You are good to go! Enjoy!

Revision as of 18:11, 2 June 2022

Description

MONAI label website  

MONAI Label is an intelligent open source image labeling and learning tool that enables users to create annotated datasets and build AI annotation models for clinical evaluation. MONAI Label enables application developers to build labeling apps in a serverless way, where custom labeling apps are exposed as a service through the MONAI Label Server.

USAGE:

     1) Server:
        To start the server as a slurm job:
        -sbatch start_monai_server_readonly.sh
        -Note server address from job output: used in next step
     2) 3DSlicer client
        - Start Open On Demand (OOD) session
        - Start Console in hwgui with 1 GPU: gpu:geforce:1
        - In console: load & start Slicer
            ml slicer/4.13.0
            Slicer
        - In Slicer GUI:
            Select module: Active Learning -> MONAILabel
            Fill in server address, e.g.: http://c1007a-s17:8000/
            Click on refresh button next to server address
            Load Next Sample
         

You are good to go! Enjoy!

Environment Modules

Run module spider MONAI label to find out what environment modules are available for this application.

System Variables

  • HPC_MONAI LABEL_DIR - installation directory