Difference between revisions of "MIRA"

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(Created page with "Category:SoftwareCategory:BiologyCategory:BioinformaticsCategory:GenomicsCategory:Assembly {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|mira}} |{{#va...")
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
+
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
* HPC_{{#uppercase:{{#var:app}}}}_DOC - documentation directory
+
* HPC_{{uc:{{#var:app}}}}_DOC - documentation directory
  
 
<!--Configuration-->
 
<!--Configuration-->

Latest revision as of 21:21, 6 December 2019

Description

mira website  

MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.

Environment Modules

Run module spider mira to find out what environment modules are available for this application.

System Variables

  • HPC_MIRA_DIR - installation directory
  • HPC_MIRA_BIN - executable directory
  • HPC_MIRA_DOC - documentation directory