Difference between revisions of "MGERT"

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Latest revision as of 14:20, 15 September 2020


mgert website  

MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different technical quirks from an inexperienced user.

Environment Modules

Run module spider mgert to find out what environment modules are available for this application.

System Variables

  • HPC_MGERT_DIR - installation directory
  • HPC_MGERT_BIN - executable directory


If you publish research that uses mgert you have to cite it as follows:

Guliaev AS, Semyenova SK. MGERT: a pipeline to retrieve coding sequences of mobile genetic elements from genome assemblies. Mob DNA. 2019;10(1):21. doi:10.1186/s13100-019-0163-6