Difference between revisions of "MARK"

From UFRC
Jump to navigation Jump to search
m (Text replacement - "#uppercase" to "uc")
 
(4 intermediate revisions by 3 users not shown)
Line 1: Line 1:
We have had inquiries concerning the program MARK.
+
[[Category:Software]]
 +
{|<!--Main settings - REQUIRED-->
 +
|{{#vardefine:app|mark}}
 +
|{{#vardefine:url|http://www.phidot.org/software/mark/index.html}}
 +
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 +
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF-->
 +
|{{#vardefine:pbs|}} <!--Enable PBS script wiki page link-->
 +
|{{#vardefine:policy|}} <!--Enable policy section -->
 +
|{{#vardefine:testing|}} <!--Enable performance testing/profiling section -->
 +
|{{#vardefine:faq|}} <!--Enable FAQ section -->
 +
|{{#vardefine:citation|}} <!--Enable Reference/Citation section -->
 +
|}
 +
<!-- ########  Template Body ######## -->
 +
<!--Description-->
 +
{{#if: {{#var: url}}|
 +
{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
  
MARK is a windows only application. We have tried to get it to work under Wine with no success.
+
Program MARK, developed and maintained by Gary White (Colorado State University) is the most flexible, widely used application currently available for parameter estimation using data from marked individuals.
  
There is documentation concerning getting MARK to work under VMWare. As VMWare is a commercial product for which we have no licenses, we have not tested this.
+
We have the Linux MARK numerical routines and the [http://www.phidot.org/software/mark/rmark/linux/ RMark R library] installed. The traditional Windows (TM) MARK software cannot be run under Linux and is not available.
==Website==
+
 
* The [http://warnercnr.colostate.edu/~gwhite/mark/mark.htm MARK Website]
+
The [http://www.phidot.org/software/mark/docs/book/pdf/mark_book.zip MARK book] manual is available for download.
 +
<!--Modules-->
 +
==Required Modules==
 +
[[Modules|modules documentation]]
 +
===Serial===
 +
*{{#var:app}}
 +
==System Variables==
 +
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 +
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 +
{{#if: {{#var: exe}}|==How To Run==
 +
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}}
 +
{{#if: {{#var: conf}}|==Configuration==
 +
See the [[{{PAGENAME}}_Configuration]] page for {{#var: app}} configuration details.|}}
 +
{{#if: {{#var: pbs}}|==PBS Script Examples==
 +
See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}}
 +
{{#if: {{#var: policy}}|==Usage Policy==
 +
WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}}
 +
{{#if: {{#var: testing}}|==Performance==
 +
WRITE PERFORMANCE TESTING RESULTS HERE|}}
 +
{{#if: {{#var: faq}}|==FAQ==
 +
*'''Q:''' **'''A:'''|}}
 +
{{#if: {{#var: citation}}|==Citation==
 +
If you publish research that uses {{{app}}} you have to cite it as follows:
 +
WRITE CITATION HERE
 +
|}}
 +
__NOTOC____NOEDITSECTION__
 +
=Validation=
 +
* Validated 4/5/2018

Latest revision as of 21:21, 6 December 2019

Description

mark website  

Program MARK, developed and maintained by Gary White (Colorado State University) is the most flexible, widely used application currently available for parameter estimation using data from marked individuals.

We have the Linux MARK numerical routines and the RMark R library installed. The traditional Windows (TM) MARK software cannot be run under Linux and is not available.

The MARK book manual is available for download.

Required Modules

modules documentation

Serial

  • mark

System Variables

  • HPC_MARK_DIR - installation directory
  • HPC_MARK_BIN - executable directory





Validation

  • Validated 4/5/2018