Difference between revisions of "MAJIQ"

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m (Text replacement - "#uppercase" to "uc")
 
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[[Category:Software]][[Category:Biology]][[Category:NGS]]
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[[Category:Software]][[Category:Phylogenetics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
|{{#vardefine:app|majiq}}
+
|{{#vardefine:app|MAJIQ}}
 
|{{#vardefine:url|https://majiq.biociphers.org/}}
 
|{{#vardefine:url|https://majiq.biociphers.org/}}
 
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)-->
 
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)-->
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* gcc/5.2.0
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory

Latest revision as of 14:59, 10 June 2022

Description

MAJIQ website  

MAJIQ and Voila are two software packages that together detect, quantify, and visualize local splicing variations (LSV) from RNA-Seq data.

Environment Modules

Run module spider MAJIQ to find out what environment modules are available for this application.

System Variables

  • HPC_MAJIQ_DIR - installation directory