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longqc website  

LongQC is a tool for the data quality control of the PacBio and ONT long reads, and it has two functionalities: sample qc and platform qc.

Environment Modules

Run module spider longqc to find out what environment modules are available for this application.

System Variables

  • HPC_LONGQC_DIR - installation directory
  • HPC_LONGQC_BIN - executable directory


If you publish research that uses longqc you have to cite it as follows:

LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data. Yoshinori Fukasawa, Luca Ermini, Hai Wang, Karen Carty, Ming-Sin Cheung. G3: Genes, Genomes, Genetics, 10(4): 1193-1196, 2020